Combinatorial protein design platform for safe, high-potency CRISPR activators

This technology is a combinatorial protein design platform that rapidly generates and screens engineered protein variants to produce safer, more potent CRISPR gene activators for research, biotechnology, and therapeutic applications.

Unmet Need: Scalable platform for low-toxicity, high-performance CRISPR activators

Current CRISPR gene activation systems can exhibit inconsistent effectiveness across different genes and cell types, unintended activation of non-target genes, and cellular toxicity, limiting safe use. Efforts to improve these tools are hindered by slow, low-throughput development methods that make it difficult to systematically optimize performance while minimizing harmful effects. These challenges reduce research reliability and pose barriers to clinical translation.

The Technology: Rapid barcoded screening of engineered CRISPR activator variants

The technology uses a combinatorial protein engineering approach to generate large libraries of engineered protein variants by assembling different functional domains into new configurations, each labeled with a unique barcode that enables simultaneous pooled testing of thousands of designs in cells. Gene activation performance and cellular fitness are measured in parallel, allowing potent variants to be identified while toxic designs are naturally depleted. Because full-length domains or entire proteins can be combined, the platform can explore a wide range of designs directly in living cells.

This technology was validated by the identification of two engineered CRISPR activators (MHV and MMH) that demonstrate strong gene activation across multiple targets and cell types while exhibiting lower cellular toxicity than commonly used activators.

Applications:

  • Potent, low-toxicity CRISPR activators for robust gene activation across targets and cell types
  • Platform for large-scale discovery and optimization of engineered protein variants
  • Engineering of immune cells and stem cells for therapeutic applications
  • Synthetic biology and programmable genetic circuit development
  • Clinical gene therapy

Advantages:

  • High-throughput generation and screening of protein variants
  • Faster discovery
  • Generalizable to diverse proteins and applications
  • Lower cellular toxicity
  • Strong, consistent gene activation across targets and cell types

Lead Inventor:

Alejandro Chavez, Ph.D.

Patent Information:

Patent Pending

Related Publications:

Tech Ventures Reference:

Quick Facts:
Tags
CRISPRCombinatoricsDNA barcodingGene therapyHigh-throughput screeningProteinProtein engineeringSynthetic biology
Inventors
Alejandro ChavezMarla Giddins
Manager
Cynthia Lang
Departments
MicrobiologyPathology & Cell Biology
Divisions
Columbia University Medical Center (CUMC)
Reference Number
CU24283
Release Date
2026-04-10