Columbia Technology Ventures

Integrated nanopore sensors for high-bandwidth DNA analysis

This technology is an integrated solid-state nanopore sensor system for the electrochemical analysis of DNA molecules and other polymers that significantly improves a system’s signal-to-noise ratio.

Unmet Need: High bandwidth nanopore sensor for DNA sequencing

There is demand for DNA sequencing systems to be single-molecule, massively parallel, and real-time. A nanopore sensor can detect translocation of charged molecules, such as nucleic acids, through the pore by measuring transient changes in the pore’s electrochemical conductance. However, many nanopore sequencer technologies employ an external amplifier to increase the electrical signal of these single molecules, a design which introduces parasitic capacitance and noise to the system. While these sequencers have found some success, there remains a push to reduce the error rate of these systems without sacrificing throughput or cost.

The Technology: A low-noise multi-channel micro-scale preamplifier with integrated microelectrodes for accurate, real-time, parallel analysis

This technology is a solid-state nanopore sensor system that integrates a low-noise transimpedance amplifier with an on-chip nanopore sensor. The sensor is fabricated by post-processing the surface of a die to create a sensitive electrode surface, which is directly integrated into the preamplifier, rather than remaining external. This configuration significantly reduces the parasitic capacitances associated with the membrane and amplifier by a factor of up to ten fold and thereby enables more accurate high-bandwidth measurements for single-molecule electrochemical DNA analysis, all without adding new components or sacrificing throughput.

Applications:

  • High-bandwidth electrochemical analysis of DNA molecules
  • Rapid, low-cost DNA sequencing
  • Electrochemical analysis of other charged polymers
  • Efficient drug screening
  • Fabrication of compact biosensing devices with robust measurement capabilities
  • Identification of small molecules and proteins

Advantages:

  • Low measurement noise due to reduced parasitic capacitance
  • High bandwidth of 1 MHz, compared to current sensors of <100 kHz
  • Compatible with current CMOS die fabrication processes
  • Integrated solid-state configuration, reducing complexity

Lead Inventor:

Ken Shepard, Ph.D.

Patent Information:

Patent Status

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